miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|71697860|gb|DR928497.1|DR928497 GGGATTTGGTGTGCTGTGATGAAGATTTGGATGAATTGAGTGAGACCCACTACCAGTTCATCTTCATCTTCATCAAATCT
CAAATCTTTCAACCCAAAACTATTCTACTGTTGTTGGGTTTTTTATTGTATCTATGTTTTTTTAACAGATCATAGACAGT
GTTCGTTGTTGGTTGCAACTACCTAACTCAGCATGGGCATGTTGGTTTCATGTTGTCGTGTTACGATGCTGAGCTTTCCT
ATGACAGGCGTGCAGACACCTTTCATGCAAGGTACCCTCCTCATGGCCGTCGAACAATAGTAATAGAAGAAGGTGTTGGG
TGGGATAGACTAAGAGCACCACCAGTTGATACCCCTCCTCATGACCTTCATATATCTGACTGTTTGAATGATCTACACCC
TGGTGATCATATTGAGATTCAATGGAGGAGGAATAAAGAATTTCCTTACGGTTGGTGGTATGGGGTTGTGGGTCATCTGG
AATCATGTGACGGGAATGAGAACTACTGCCGATGTCATAGTAGTGATACAGTGATGTTGGATTTCAACCAATATACCCCT
GGTTCAAGGTGGAGGCAAACAATCATAAACAGGAAAGACCATAGAGAAGAAGGAAATGAAACAGATGGCTTTTATGGAGG
AATTAGAAAAATTTACAGCATGGAGGAGATTGCTATGTGGAAGCGGCTCTGGCCAAAGGAAGTCTTGGAATAGGTTCATA
TGGTTAATTAGTGATAACATTAATGTGTATATGGACCTTGGTTCAAGTGTGGAGTATCGTAGTCAGACAGAGAAAGATTT
TCGGGAGCTGAAGACTCACTTTGGTTGTTGTGGAGGCCATGTTTTTTCCGGC




Most similar to sp|Q6NLB1|FB118_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6NLB1|FB118_ARATH F-box protein At2g26850 OS=Arabidopsis
           thaliana GN=At2g26850 PE=2 SV=1
          Length = 371

 Score =  295 bits (755), Expect = 3e-79
 Identities = 125/177 (70%), Positives = 151/177 (85%)
 Frame = +3

Query: 180 YLTQHGHVGFMLSCYDAELSYDRRADTFHARYPPHGRRTIVIEEGVGWDRLRAPPVDTPP 359
           Y  ++GHVGFMLSCYDAELSYD   +TF ARYPPHG+R I +E+ V W+R+RA PVD  P
Sbjct: 195 YNRENGHVGFMLSCYDAELSYDTDTNTFQARYPPHGKRAIAVEKDVTWERIRAAPVDASP 254

Query: 360 HDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENYCRCHSSDTVML 539
           H+L++SD LN+L PGDHIEIQWRRNKEFPYGWWY VVGH+ESCDGN N+C+CH+S+ ++L
Sbjct: 255 HNLYVSDSLNELKPGDHIEIQWRRNKEFPYGWWYSVVGHMESCDGNLNHCQCHNSEMMVL 314

Query: 540 DFNQYTPGSRWRQTIINRKDHREEGNETDGFYGGIRKIYSMEEIAMWKRLWPKEVLE 710
           +FNQYT GSRWR+T+INR+DHRE+GNE DGFYGGIRKI   E+I MWKRLWP  +LE
Sbjct: 315 EFNQYTVGSRWRKTMINRRDHREKGNEEDGFYGGIRKINCKEDIEMWKRLWPSSILE 371